designDF: Extract design

In Lina-Gao/DEdesign: Statistical design for RNA-seq experiments aimed at identifying differentially expressed genes

Description

Extracts desgins from a DEdesign object

Usage

designDF(x, selection)

Arguments

x	a DEdesign object (output from gendesign).
selection	choose which design to output: Design based on input or suggestedDesign. Default is Design.

Value

a data frame giving flowcell, lane and adapter assignment for each experimental unit

Examples

treatments <- data.frame(trt = letters[1:6], replicates = rep(3,6))
des <- gendesign(treatments=treatments, nperlane=4, search.surrounding = 2)
designDF(des,selection="Design")
designDF(des,selection="suggestedDesign")

Lina-Gao/DEdesign documentation built on May 5, 2019, 2:39 a.m.