dot-onedesign: Calculate design for a specified nperlane

In Lina-Gao/DEdesign: Statistical design for RNA-seq experiments aimed at identifying differentially expressed genes

Description

Calculate design for a specified nperlane

Usage

.onedesign(treatments, nperlane, seed, searches)

Arguments

treatments	reformated input treatments dataframe
nperlane	An integer for number of samples per lane for sequencing. Default is 4. This is used to generate Design in results.
seed	an integer initializing the random number generator. The default is seed=1. Designs can be rebuilt repeatedly using different seed to check that a near-optimum design has been found.
searches	the maximum number of local optima searched at each stage of a treatment and block design optimization. The default depends on the design size. For optimum results, try large number of searches.

Value

blocksdesign output for one nperlane value

Lina-Gao/DEdesign documentation built on May 5, 2019, 2:39 a.m.