efficiency: Extract efficiency
In Lina-Gao/DEdesign: Statistical design for RNA-seq experiments aimed at identifying differentially expressed genes
Description
Usage
Arguments
Value
Examples
Description
Extracts D-efficiency from a DEdesign object
Usage
1
efficiency(x, selection)
Arguments
x
a DEdesign object (output from gendesign).
selection
choose which design to output: "Design" based on input or "suggestedDesign". Default is "Design".
Value
a data frame giving D-efficiencies of flowcell (If there are more than one flowcell), lane and adapter blocks
Examples
1
2
3
4
treatments <- data.frame(trt = letters[1:6], replicates = rep(3,6))
des <- gendesign(treatments=treatments, nperlane=4, search.surrounding = 2)
efficiency(des,selection="Design")
efficiency(des,selection="suggestedDesign")
Lina-Gao/DEdesign documentation built on May 5, 2019, 2:39 a.m.
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Description Usage Arguments Value Examples
Description
Extracts D-efficiency from a DEdesign object
Usage
1 | efficiency(x, selection)
|
Arguments
x |
a |
selection |
choose which design to output: " |
Value
a data frame giving D-efficiencies of flowcell (If there are more than one flowcell), lane and adapter blocks
Examples
1 2 3 4 | treatments <- data.frame(trt = letters[1:6], replicates = rep(3,6))
des <- gendesign(treatments=treatments, nperlane=4, search.surrounding = 2)
efficiency(des,selection="Design")
efficiency(des,selection="suggestedDesign")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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