Files in Liubuntu/SeqSQC
A bioconductor package for sample quality check with next generation sequencing data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/IBDCheck.R
R/IBDRemove.R
R/Inbreeding.R
R/LoadVfile.R
R/MissingRate.R
R/PCACheck.R
R/RenderReport.R
R/S4.R
R/SeqOpen.R
R/SeqSQC-package.R
R/SexCheck.R
R/dataset_docum.R
R/mergeGDS.R
R/plotIBD.R
R/plotInbreeding.R
R/plotMissingRate.R
R/plotPop.R
R/plotQC.R
R/plotQCData.R
R/plotSexCheck.R
R/problemList.R
R/readgdsn.R
R/sampleQC.R
R/subsetGDS.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/CCDS.Hs37.3.reduced_chr1.bed
inst/extdata/example.gds
inst/extdata/example.seqfile.Rdata
inst/extdata/example_sub.vcf
inst/extdata/metadata.csv
inst/extdata/sampleAnnotation.txt
inst/extdata/sampleQCReport.Rmd
inst/script/make-metadata.R
inst/todo.Rmd
man/CCDS.Hs37.3.reduced_chr1.bed.Rd
man/IBDCheck.Rd
man/IBDRemove.Rd
man/Inbreeding.Rd
man/LoadVfile.Rd
man/MissingRate.Rd
man/PCACheck.Rd
man/RenderReport.Rd
man/SeqOpen.Rd
man/SeqSQC-class.Rd
man/SeqSQC-package.Rd
man/SexCheck.Rd
man/example.gds.Rd
man/example.seqfile.Rdata.Rd
man/example_sub.vcf.Rd
man/plotQC.Rd
man/problemList.Rd
man/sampleAnnotation.txt.Rd
man/sampleQC.Rd
tests/testthat.R
tests/testthat/test_metaInput.R
vignettes/vignette.Rmd
