Man pages for Liuy12/MBDDiff
MBDDiff for processing MBDcap-seq datasets
| bedtoolsr | Counting reads mapped to a specified region using bedtools |
| CalculateTPM | Calculate transcript per million (TPM) for count matrix |
| GetChromLength | Retrive chromsome length information from UCSC database |
| GetPromoterAnno | Retrive promoter annotation from UCSC database |
| heatmap.3 | More customized heatmap that allow control over color key |
| IdentifyBackground | Identify annotation for background noise |
| MBDDiff | Performing differential methylation analysis based on... |
| MBDDiff-package | MBDDiff for processing MBDcap-seq datasets |
| MethyEnrich | Quality control of MBDcap-seq datasets |
| pcaplot | 2d and 3d sample relationship plot |
| PromoterCount | Example Datasets used in the manual pages |
| ShowAvailableOrg | Show a list of available organisms from UCSC database |
| Summerizebg | Summerizing background noise for each promoter region |
