CalculateTPM: Calculate transcript per million (TPM) for count matrix
In Liuy12/MBDDiff: MBDDiff for processing MBDcap-seq datasets
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Calculate TPM based on user-specifed count matrix and transcript length. This can be generalized to any certain genomic interval instead of limiting to transcript.
Usage
1
CalculateTPM(dataMat, gaplength)
Arguments
dataMat
a matrix or data.frame of count datasets
gaplength
a integer vector that contains length information for each row of dataMat.
Value
A matrix or data.frame of TPM normalized values
Author(s)
Yuanhang Liu
References
https://github.com/Liuy12/MBDDiff
See Also
Examples
1
2
data(PromoterCount)
PromoterCount_TPM <- CalculateTPM(Promoter, Promoterlength)
Liuy12/MBDDiff documentation built on May 7, 2019, 2 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
Calculate TPM based on user-specifed count matrix and transcript length. This can be generalized to any certain genomic interval instead of limiting to transcript.
Usage
1 | CalculateTPM(dataMat, gaplength)
|
Arguments
dataMat |
a matrix or data.frame of count datasets |
gaplength |
a integer vector that contains length information for each row of dataMat. |
Value
A matrix or data.frame of TPM normalized values
Author(s)
Yuanhang Liu
References
https://github.com/Liuy12/MBDDiff
See Also
Examples
1 2 | data(PromoterCount)
PromoterCount_TPM <- CalculateTPM(Promoter, Promoterlength)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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