Files in LucaGiudice/Simpati

Pathway-based classifier exploits patient similarity network paradigm

R/funs_RWR.R R/funs_conversations.R R/funs_enrichment.R R/funs_measures.R R/funs_plot_net.R R/funs_pred.R R/funs_stats_test.R R/funs_tools.R R/funs_top_clustering_bffs_v1_xPred.R R/funs_top_clustering_bffs_v7.R R/funs_tune.R R/funs_wrappers.R README.md man/Adj_Weighted_Jaccard.Rd man/Adj_Weighted_Jaccard_gene.Rd man/adj2edg.Rd man/area_quadr.Rd man/autri.Rd man/check_elems.Rd man/clean_pathways.Rd man/column_rank.Rd man/complete_m.Rd man/corr_AA_mat.Rd man/corr_BB_mat.Rd man/data_preparation.Rd man/edg2adj.Rd man/eig_score_adj.Rd man/get_A_prob.Rd man/get_B_prob.Rd man/get_KeysDis_associations.Rd man/get_SemType_associations.Rd man/get_cancerAtlas_associations.Rd man/get_consensus_classes.Rd man/get_consensus_pred.Rd man/get_genes_desc.Rd man/get_indxs.Rd man/get_new_info.Rd man/get_normalAtlas_associations.Rd man/get_pathway_enrich.Rd man/get_perfs.Rd man/get_power.Rd man/get_sign_pathways.Rd man/get_strength_sim.Rd man/get_used_pathways.Rd man/h_min.Rd man/harm_ds.Rd man/hello.Rd man/plot_network.Rd man/predict_pats.Rd man/reduce_net.Rd man/rwrProp.Rd man/scaling_matrix.Rd man/see.Rd man/set_variables.Rd man/sim_WJ.Rd man/strong.comm.AA.Rd man/strong.comm.AA.cor.Rd man/strong.comm.BB.Rd man/strong.comm.BB.cor.Rd man/strong.comm.Rd man/strong.comm.xPred2.Rd man/strong.comm.xPred3.Rd man/tune_performances.Rd man/twoDist.Rd man/vec2m.Rd man/vectorizing_matrix.Rd man/wrapper_cons.Rd man/wrapper_human_mutations.Rd vignettes/Classification_Mutations_advanced.Rmd vignettes/Classification_Mutations_introduction.Rmd