get_KeysDis_associations: Finds "disase" -> "gene" associations with disgnet database
In LucaGiudice/Simpati: Pathway-based classifier exploits patient similarity network paradigm
Description
Usage
Arguments
Value
View source: R/funs_enrichment.R
Description
Detects "disase" –> "gene" associations with disgnet database and return the ID of the publications
confirming the associations for each gene with the user-provided key type
Usage
1
get_KeysDis_associations(genes, key_names, db_disgnet)
Arguments
genes
Vector of gene names that are possible to query in disgnet database
db_disgnet
disgnet database
key_type_disgnet
character vector defining the disease of interest
Value
Return db_lit: list of matrices, each one reports the publications found supporting the association
between a gene and the disease defined with by the key words
count: percentage of disease key words associated to the genes of interest
LucaGiudice/Simpati documentation built on Jan. 27, 2022, 11:42 p.m.
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Description Usage Arguments Value
View source: R/funs_enrichment.R
Description
Detects "disase" –> "gene" associations with disgnet database and return the ID of the publications confirming the associations for each gene with the user-provided key type
Usage
1 | get_KeysDis_associations(genes, key_names, db_disgnet)
|
Arguments
genes |
Vector of gene names that are possible to query in disgnet database |
db_disgnet |
disgnet database |
key_type_disgnet |
character vector defining the disease of interest |
Value
Return db_lit: list of matrices, each one reports the publications found supporting the association between a gene and the disease defined with by the key words count: percentage of disease key words associated to the genes of interest
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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