plot_network: This function creates an image that visualize a Patient...

In LucaGiudice/Simpati: Pathway-based classifier exploits patient similarity network paradigm

Description

This function creates an image that visualize a Patient Similarity Network (PSN)

Usage

plot_network(
  m,
  top_connections = 30,
  node_highlight = "all",
  image_type = "png",
  image_name = "plot_network"
)

Arguments

m	a similarity matrix
top_connections	an integer in [1,100], percentage of top connection to visualize
node_highlight	a string or vector of strinvs indicating the node id(s) to highlight in the network. By default all connections in top_connection are highlited
image_type	a string indicating the format of the output image
image_name	a string containing the name of the output image
label1	a string indicating the name of the first class
label2	a string indicating the name of the second class

Value

a list representing a qgraph object. The method saves an image with the visualization of the network

LucaGiudice/Simpati documentation built on Jan. 27, 2022, 11:42 p.m.