get_normalAtlas_associations: Finds tissues associations to the genes of interest
In LucaGiudice/Simpati: Pathway-based classifier exploits patient similarity network paradigm
Description
Usage
Arguments
Value
View source: R/funs_enrichment.R
Description
Detects "tissue" –> "gene" associations with human atlas database and return the ID of the publications
confirming the associations for each gene with the user-provided key type
Usage
1
get_normalAtlas_associations(genes, key_names, db_normal_ATLAS)
Arguments
genes
Vector of gene names that are possible to query in disgnet database
key_names
character vector defining the tumor of interest
db_cancer_ATLAS
human atlas database
Value
Return list for each gene with the user-defined tissues to which is associated
LucaGiudice/Simpati documentation built on Jan. 27, 2022, 11:42 p.m.
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Description Usage Arguments Value
View source: R/funs_enrichment.R
Description
Detects "tissue" –> "gene" associations with human atlas database and return the ID of the publications confirming the associations for each gene with the user-provided key type
Usage
1 | get_normalAtlas_associations(genes, key_names, db_normal_ATLAS)
|
Arguments
genes |
Vector of gene names that are possible to query in disgnet database |
key_names |
character vector defining the tumor of interest |
db_cancer_ATLAS |
human atlas database |
Value
Return list for each gene with the user-defined tissues to which is associated
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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