readChromatograms: Import chromatograms stored as ChemStation exported .csv...

In LucasBusta/phyloChemistry: Chemical and Sequence Analyses in a Phylogenetic Context

Description

Allows the user to import chromatograms stored as .csv files. Files should have originated from an Agilent GC system running ChemStation Files should be in the format of character~var1-var2.csv "character" is the name of the chromatogram, var1 and var2 are variables you want associated with that chromatogram.

Usage

readChromatograms(dir, normalize_level = c("none", "var1", "var2"),
  normalize_range = NULL)

Arguments

dir	A directory containing (ONLY) the chromatogram(s) that are to be plotted
normalize_level	Level at which to normalize chromatogram
normalize_range	y range to consider during normalization. Useful for normalizing but excluding solvent peak(s), for example

Examples

readChromatograms()

LucasBusta/phyloChemistry documentation built on Sept. 6, 2020, 11:36 p.m.