readGFFs: readGFFs

In LucasBusta/phyloChemistry: Chemical and Sequence Analyses in a Phylogenetic Context

Description

Read multiple genome feature files into a tidy dataframe

Usage

readGFFs(input_frame, subset_mode = c("none", "goi_only", "foi_only",
  "goi_region", "foi_region", "name_check"), goi = NULL, foi = NULL,
  region_reach = 2e+05, concatenate_by_species = TRUE,
  concatenation_spacing = 10000, omit = NULL)

Arguments

input_frame	A dataframe with columns: Genus_species, GFF_in_path, region_reach, concatenation_spacing
query	A .fa file containing the query
phylochem	The phylochem object to which the data should be bound

LucasBusta/phyloChemistry documentation built on Sept. 6, 2020, 11:36 p.m.