Description Usage Arguments Details Examples
This function takes a filter configuration and applies to echograms given on an echoData
object.
1 | getOxyrange(fluidMatrix, filterSettings = NULL, stepBYstep = FALSE, ...)
|
fluidMatrix |
Object of class |
filterSettings |
List with combination of filters. |
stepBYstep |
|
... |
Arguments passed to |
If filterSettings = NULL
, oXim will use filter configuration present on defaultFilterSettings
data set. For extra details about image filters, see createFilterSetting
help.
Application of filters may produce some gaps in the final matrix. In order to fill them, the function uses
smooth.spline
whose arguments can be passed using by ...
.
1 2 3 4 5 | fileMode <- list(fish38_file = system.file("extdata", "fish38.mat", package = "oXim"),
fluid120_file = system.file("extdata", "fluid120.mat", package = "oXim"),
blue38_file = system.file("extdata", "blue38.mat", package = "oXim"))
echoData <- readEchograms(fileMode = fileMode)
oxyLimits <- getOxyrange(fluidMatrix = echoData)
|
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