net_dist_bin: Function to calculate the distance between nodes.
In Luisiglm/KBoost: Inference of gene regulatory networks from gene expression data
Description
Usage
Arguments
Value
Examples
Description
Function to calculate the distance between nodes.
Usage
1
net_dist_bin(GRN, TFs, thr)
Arguments
GRN
An inferred networks with the predictive probabilities that a transcription factor regulates a gene.
TFs
A vector with indexes of the rows of GRN which correspond to TFs.
thr
A scalar between 0 and 1 that is used select the edges with large posterior probabilities.
Value
a matrix with the distances between edges.
Examples
1
2
3
data(D4_multi_1)
Net = kboost(D4_multi_1)
dist = net_dist_bin(Net$GRN,Net$TFs,0.1)
Luisiglm/KBoost documentation built on May 13, 2021, 7:27 p.m.
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Description Usage Arguments Value Examples
Description
Function to calculate the distance between nodes.
Usage
1 | net_dist_bin(GRN, TFs, thr)
|
Arguments
GRN |
An inferred networks with the predictive probabilities that a transcription factor regulates a gene. |
TFs |
A vector with indexes of the rows of GRN which correspond to TFs. |
thr |
A scalar between 0 and 1 that is used select the edges with large posterior probabilities. |
Value
a matrix with the distances between edges.
Examples
1 2 3 | data(D4_multi_1)
Net = kboost(D4_multi_1)
dist = net_dist_bin(Net$GRN,Net$TFs,0.1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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