AUPR_AUROC_matrix: Function to calculate the AUROC and AUPR of a known network....
In Luisiglm/KBoost: Inference of gene regulatory networks from gene expression data

Description Usage Arguments Value Examples

Function to calculate the AUROC and AUPR of a known network. This function was made to test the R implementation of the KBoost Package.

1	AUPR_AUROC_matrix(Net, G_mat, auto_remove, TFs, upper_limit)

`Net`	An inferred gene regulatory network
`G_mat`	A matrix with the gold standard network.
`auto_remove`	TRUE if the auto-regulation is to be discarded.
`TFs`	the indexes of the rows of Net that are TFs.
`upper_limit`	Top number of edges to use.

list object with AUPR and AUROC of gold standard in matrix format.

    data(D4_multi_1)
    Net = kboost(D4_multi_1)
    g_mat1 = tab_2_matrix_D4(KBoost::G_D4_multi_1,100)
    aupr_auroc = AUPR_AUROC_matrix(Net$GRN,g_mat1,auto_remove = TRUE,  seq_len(100))