chmColorMap-set: Set the color map of an NG-CHM object

In MD-Anderson-Bioinformatics/NGCHM-R: Next Generation Clustered Heat Maps

Set the color map of an NG-CHM object

Description

Set the color map of an NG-CHM object

Usage

chmColorMap(x) <- value

Arguments

x	The NG-CHM object on which to set the color map.
value	The ngchmColormap value to set.

Value

The modified NG-CHM object.

See Also

chmColorMap

Examples

# If the NGCHMDemoData package is installed, use it to demo usage
if (requireNamespace("NGCHMDemoData", quietly = TRUE)) {
  data(TCGA.GBM.EXPR, package = "NGCHMDemoData")
  dataLayer <- chmNewDataLayer("GBM layer", TCGA.GBM.EXPR[1:30, 1:30])
  chmColorMap(dataLayer) <- chmNewColorMap(c(2, 14))
}
# Small example not requiring NGCHMDemoData
matrix <- matrix(rnorm(100),
  nrow = 10, ncol = 10,
  dimnames = list(paste0("r", 1:10), paste0("c", 1:10))
)
dataLayer <- chmNewDataLayer("my layer", matrix)
chmColorMap(dataLayer) <- chmNewColorMap(c(2, 14))

MD-Anderson-Bioinformatics/NGCHM-R documentation built on April 1, 2024, 12:34 p.m.