chmColorMap: Get the color map of an NG-CHM object.

In MD-Anderson-Bioinformatics/NGCHM-R: Next Generation Clustered Heat Maps

Get the color map of an NG-CHM object.

Description

Get the color map of an NG-CHM object.

Usage

chmColorMap(x)

Arguments

x	The NG-CHM object to get the color map of. Can be: An object of class ngchmLayer An object of class ngchmBar An object of class ngchmCovariate

Value

An ngchmColormap

See Also

chmNewColorMap

Examples

# If the NGCHMDemoData package is installed, use it to demo usage
if (requireNamespace("NGCHMDemoData", quietly = TRUE)) {
  data(TCGA.GBM.EXPR, package = "NGCHMDemoData")
  colormap <- chmColorMap(chmNewDataLayer("New layer", TCGA.GBM.EXPR[1:3, 1:3]))
}
matrix <- matrix(rnorm(100),
  nrow = 10, ncol = 10,
  dimnames = list(paste0("r", 1:10), paste0("c", 1:10))
)
colormap <- chmColorMap(chmNewDataLayer("New layer", matrix))

MD-Anderson-Bioinformatics/NGCHM-R documentation built on April 1, 2024, 12:34 p.m.