calcAdjacency: Add measures of adjacency based on cell positions in the...
In MEP-LINCS/MEMA: Functions to preprocess and normalize MEMA data
Description
Add measures of adjacency based on cell positions in the population
Usage
1
2
calcAdjacency(dt, neighborhoodNucleiRadii = 7, neighborsThresh = 0.4,
wedgeAngs = 20, outerThresh = 0.5)
Arguments
neighborhoodNucleiRadii
Defines the neighborhood annulus
neighborsThresh
Gates sparse cells on a spot
wedgeAngs
Size in degrees of spot wedges used in perimeter gating
outerThresh
Defines outer cells used in perimeter gating
MEP-LINCS/MEMA documentation built on May 20, 2019, 2:47 p.m.
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Description
Add measures of adjacency based on cell positions in the population
Usage
1 2 | calcAdjacency(dt, neighborhoodNucleiRadii = 7, neighborsThresh = 0.4,
wedgeAngs = 20, outerThresh = 0.5)
|
Arguments
neighborhoodNucleiRadii |
Defines the neighborhood annulus |
neighborsThresh |
Gates sparse cells on a spot |
wedgeAngs |
Size in degrees of spot wedges used in perimeter gating |
outerThresh |
Defines outer cells used in perimeter gating |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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