kmeansCluster: kMeans cluster an intensity value
In MEP-LINCS/MEMA: Functions to preprocess and normalize MEMA data
Description
Usage
Arguments
Value
Description
Returns cluster assignments for intensity values based on a control ligand
Usage
1
kmeansCluster(x, value, ctrlLigand = "HighSerum")
Arguments
x
A dataframe or data.table
value
A character vector of one column name in x that conatins non-negative intensity values
ctrlLigand
A character vector of one Ligand name in x
Value
Cluster assignments of length nrow(x)for the value column based on a kmeans threshold calculated from the ligand values. The values are 1 for intensities above the threshold and 0 for values equal to or less than the trheshold.
MEP-LINCS/MEMA documentation built on May 20, 2019, 2:47 p.m.
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Description Usage Arguments Value
Description
Returns cluster assignments for intensity values based on a control ligand
Usage
1 | kmeansCluster(x, value, ctrlLigand = "HighSerum")
|
Arguments
x |
A dataframe or data.table |
value |
A character vector of one column name in x that conatins non-negative intensity values |
ctrlLigand |
A character vector of one Ligand name in x |
Value
Cluster assignments of length nrow(x)for the value column based on a kmeans threshold calculated from the ligand values. The values are 1 for intensities above the threshold and 0 for values equal to or less than the trheshold.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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