Files in MEP-LINCS/MEMA
Functions to preprocess and normalize MEMA data

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
MEMA.Rproj
NAMESPACE
R/MEPLINCSFunctions.R R/PlottingFunctions.R R/PreProcessCellFunctions.R R/QA_functions.R R/RUV_normalize_functions.R R/annotate_functions.R R/common_signal_functions.R R/create_data_levels.R R/derivedParameter_functions.R R/gal_parse_functions.R R/gating.R R/normalize_functions.R R/population_annotate_functions.R R/utils.R README.md
inst/CITATION
inst/doc/Preprocess-Levels1and2.R inst/doc/Preprocess-Levels1and2.Rmd
inst/doc/Preprocess-Levels1and2.html
inst/doc/Preprocess-Levels3and4.R inst/doc/Preprocess-Levels3and4.Rmd
inst/doc/Preprocess-Levels3and4.html
man/.Rapp.history
man/CV.Rd man/QASpotData.Rd man/QASpotLevelData.Rd man/RUVArrayWithResiduals.Rd man/RUVIII.Rd man/addBarcodes.Rd man/addOmeroIDs.Rd man/addPolarCoords.Rd man/addSpotProportions.Rd man/boundedLog2.Rd man/boundedLogit.Rd man/calc2NProportion.Rd man/calcAdjacency.Rd man/calcProportion.Rd man/calcQAScore.Rd man/calcResidual.Rd man/calcTheta.Rd man/cellNeighbors.Rd man/cleanColumnNames.Rd man/cleanCommonSignalDt.Rd man/cleanLegacyIssues.Rd man/combineSignals.Rd man/compressHA.Rd man/convertColumnNames.Rd man/create8WellHistograms.Rd man/create8WellPseudoImage.Rd man/createRUVM.Rd man/findPerimeterCell.Rd man/formatCP96Well.Rd man/gateCells.Rd man/gateOnQuantile.Rd man/gateOnlocalMinima.Rd man/getBarcodes.Rd man/getCPData.Rd man/getICData.Rd man/getLogMetadata.Rd man/getMetadata.Rd man/getOmeroIDs.Rd man/getSpotLevelData.Rd man/getSpotMetadata.Rd man/getWellMetadata.Rd man/kmeansCluster.Rd man/kmeansClusterValue.Rd man/labelOuterCells.Rd man/localMinima.Rd man/loessModel.Rd man/loessNorm.Rd man/loessNormArray.Rd man/logIntensities.Rd man/medianNorm.Rd man/mergeSpot8WellMetadata.Rd man/mergeSpot96WellMetadata.Rd man/normRUVLoessResiduals.Rd man/numericMedian.Rd man/plotLEHmap.Rd man/plotSCCHeatmapsQAHistograms.Rd man/preprocessCommonSignalsLevel3.Rd man/preprocessLevel4.Rd man/processan2omero.Rd man/readLogData.Rd man/readMetadata.Rd man/readSpotMetadata.Rd man/rotateMetadata.Rd man/se.Rd man/signalResidualMatrix.Rd man/spotNormIntensities.Rd man/summarizeToSpot.Rd man/wellAN.Rd man/writeCellLevel.Rd tests/testthat.R tests/testthat/testMEMAQA.R vignettes/Preprocess-Levels1and2.Rmd vignettes/Preprocess-Levels3and4.Rmd
MEP-LINCS/MEMA documentation built on Oct. 20, 2017, 4:13 a.m.