API for MEP-LINCS/MEMA
Functions to preprocess and normalize MEMA data

Global functions
CV Man page Source code
QASpotData Man page Source code
QASpotLevelData Man page Source code
RUVArrayWithResiduals Man page Source code
RUVIII Man page Source code
addArrayPositionNoRotate Source code
addBarcodes Man page Source code
addOmeroIDs Man page Source code
addPolarCoords Man page Source code
addSpotProportions Man page Source code
boundedLog2 Man page Source code
boundedLogit Man page Source code
calc2NProportion Man page Source code
calcAdjacency Man page Source code
calcProportion Man page Source code
calcQAScore Man page Source code
calcResidual Man page Source code
calcTheta Man page Source code
cellNeighbors Man page Source code
cleanColumnNames Man page Source code
cleanCommonSignalDt Man page Source code
cleanLegacyIssues Man page Source code
combineSignals Man page Source code
compressHA Man page Source code
convertColumnNames Man page Source code
create8WellHistograms Man page Source code
create8WellPseudoImage Man page Source code
createRUVM Man page Source code
dfZoom Source code
filterObjects Source code
findPerimeterCell Man page Source code
formatCP96Well Man page Source code
gateCells Man page Source code
gateOnQuantile Man page Source code
gateOnlocalMinima Man page Source code
getBarcodes Man page Source code
getCPData Man page Source code
getICData Man page Source code
getLogMetadata Man page Source code
getMetadata Man page Source code
getOmeroIDs Man page Source code
getSpotLevelData Man page Source code
getSpotMetadata Man page Source code
getWellMetadata Man page Source code
kmeansCluster Man page Source code
kmeansClusterValue Man page Source code
labelOuterCells Man page Source code
localMinima Man page Source code
loessModel Man page Source code
loessNorm Man page Man page Source code Source code
loessNormArray Man page Man page Source code Source code
logIntensities Man page Source code
medianNorm Man page Source code
mergeSpot8WellMetadata Man page Source code
mergeSpot96WellMetadata Man page Source code
normRUVLoessResiduals Man page Source code
numericMedian Man page Source code
parseSimulatedContents Source code
plotLEHmap Man page Source code
plotSCCHeatmapsQAHistograms Man page Source code
preprocessCommonSignalsLevel3 Man page Source code
preprocessLevel4 Man page Source code
processan2omero Man page Source code
readLogData Man page Source code
readMetadata Man page Source code
readSpotMetadata Man page Source code
rotateMetadata Man page Source code
se Man page Source code
signalResidualMatrix Man page Source code
spotNormIntensities Man page Source code
summarizeToSpot Man page Source code
wellAN Man page Source code
writeCellLevel Man page Source code
MEP-LINCS/MEMA documentation built on Oct. 20, 2017, 4:13 a.m.