RUVIII: RUV normalization function

In MEP-LINCS/MEMA: Functions to preprocess and normalize MEMA data

Description

Based on method and code from Johann Gagnon-Bartsch. This function is written by Johann Gagnon-Bartsch and will become part of the ruv package.

Usage

RUVIII(Y, M, ctl, k = NULL, eta = NULL, average = FALSE,
  fullalpha = NULL)

Arguments

Y	The matrix of values to be normalized
M	A amtrix that describes the organization of the replicates in the Y matrix
ctl	An integer vector denoted which columns in the Y matrix are controls
k	The number of factors to remove
average	Logical to determine if averages should be returned
fullalpha

Value

A list with the normalized Y values and the fullalpha matrix

MEP-LINCS/MEMA documentation built on May 20, 2019, 2:47 p.m.