deepblue_enrich_regions_fast: enrich_regions_fast

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Enrich the regions based on regions bitmap signature comparison.

Usage

deepblue_enrich_regions_fast(query_id = NULL, genome = NULL,
  epigenetic_mark = NULL, biosource = NULL, sample = NULL,
  technique = NULL, project = NULL,
  user_key = deepblue_options("user_key"))

Arguments

query_id	- A string (Query ID)
genome	- A string or a vector of string (the target genome)
epigenetic_mark	- A string or a vector of string (name(s) of selected epigenetic mark(s))
biosource	- A string or a vector of string (name(s) of selected biosource(s))
sample	- A string or a vector of string (id(s) of selected sample(s))
technique	- A string or a vector of string (name(s) of selected technique(s))
project	- A string or a vector of string (name(s) of selected projects)
user_key	- A string (users token key)

Value

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data(). The result is a list containing the datasets that overlap with the query_id regions.)

See Also

Other Enrich the genome regions: deepblue_enrich_regions_go_terms, deepblue_enrich_regions_overlap

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.