deepblue_filter_regions: filter_regions

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Filter the genomic regions by their content.

Usage

deepblue_filter_regions(query_id = NULL, field = NULL, operation = NULL,
  value = NULL, type = NULL, user_key = deepblue_options("user_key"))

Arguments

query_id	- A string (Query ID)
field	- A string (field that is filtered by)
operation	- A string (operation used for filtering. For 'string' must be '==' or '!=' and for 'number' must be one of these: ==,!=,>,>=,<,<=)
value	- A string (value the operator is applied to)
type	- A string (type of the value: 'number' or 'string' )
user_key	- A string (users token key)

Value

id - A string (id of filtered query)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

Examples

deepblue_filter_regions(query_id = "q12345",
    field = "VALUE",
    operation = ">",
    value = "100",
    type = "number",
    user_key = "anonymous_key")

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.