Description Usage Arguments Value See Also Examples
Extend the genomic regions included in the query. It is possible to extend downstream, upstream or in both directions.
1 2 | deepblue_extend(query_id = NULL, length = NULL, direction = NULL,
use_strand = NULL, user_key = deepblue_options("user_key"))
|
query_id |
- A string (Query ID) |
length |
- A int (The new region length) |
direction |
- A string (The direction that the region will be extended: 'BACKWARD', 'FORWARD', 'BOTH'. (Empty value will be used for both direction.) |
use_strand |
- A boolean (Use the region column STRAND to define the region direction) |
user_key |
- A string (users token key) |
id - A string (id of the new query)
Other Operating on the data regions: deepblue_aggregate
,
deepblue_binning
,
deepblue_count_regions
,
deepblue_coverage
,
deepblue_distinct_column_values
,
deepblue_filter_regions
,
deepblue_flank
,
deepblue_get_experiments_by_query
,
deepblue_get_regions
,
deepblue_input_regions
,
deepblue_intersection
,
deepblue_merge_queries
,
deepblue_overlap
,
deepblue_query_cache
,
deepblue_query_experiment_type
,
deepblue_score_matrix
,
deepblue_select_annotations
,
deepblue_select_experiments
,
deepblue_select_regions
,
deepblue_tiling_regions
1 2 3 4 5 6 | annotation_id = deepblue_select_annotations(
annotation_name="CpG Islands",
genome="hg19", chromosome="chr1")
deepblue_extend(query_id = annotation_id,
length = 2000, direction = "BOTH",
use_strand = TRUE)
|
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