deepblue_query_experiment_type: query_experiment_type

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Filter the query ID for regions associated with experiments of a given type. For example, it is possible to select only peaks using this command with the 'peaks' parameter.

Usage

deepblue_query_experiment_type(query_id = NULL, type = NULL,
  user_key = deepblue_options("user_key"))

Arguments

query_id	- A string (Query ID)
type	- A string (experiment type (peaks or signal))
user_key	- A string (users token key)

Value

information - A string (New query ID.)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

Examples

h3k27ac_regions = deepblue_select_regions(
    genome ='GRCh38',
    epigenetic_mark ='H3k27ac',
    project ='BLUEPRINT Epigenome',
    chromosome ='chr1')
deepblue_query_experiment_type(
    query_id = h3k27ac_regions,
    type = "peaks")

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.