deepblue_enrich_regions_go_terms: enrich_regions_go_terms

In MPIIComputationalEpigenetics/DeepBlue-R: DeepBlueR

Description

Enrich the regions based on Gene Ontology terms.

Usage

deepblue_enrich_regions_go_terms(query_id = NULL, gene_model = NULL,
  user_key = deepblue_options("user_key"))

Arguments

query_id	- A string (Query ID)
gene_model	- A string (the gene model)
user_key	- A string (users token key)

Value

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data(). The result is a list containing the GO terms that overlap with the query_id regions.)

See Also

Other Enrich the genome regions: deepblue_enrich_regions_fast, deepblue_enrich_regions_overlap

Examples

data_id = deepblue_select_experiments(
    experiment_name="E002-H3K9ac.narrowPeak.bed")

filtered_id = deepblue_filter_regions(query_id = data_id,
    field = "VALUE",
    operation = ">",
    value = "100",
    type = "number",
    user_key = "anonymous_key")

deepblue_enrich_regions_go_terms(query_id = filtered_id,
   gene_model = "gencode v23")

MPIIComputationalEpigenetics/DeepBlue-R documentation built on Aug. 11, 2021, 3:18 p.m.