cna: An example IMPACT cBioPortal mutation data set in API format
In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
cna R Documentation
An example IMPACT cBioPortal mutation data set in API format
Description
This set was created from a random sample of 200 patients from
publicly available prostate cancer data from cBioPortal. The file
is in API format.
Usage
cna
Format
A data frame with copy number alterations (CNA) from Abida et al.
JCO Precis Oncol 2017.Retrieved from cBioPortal.There are 475 observations
and 29 variables.
- hugoGeneSymbol
Character w/ 324 levels,
Column containing all HUGO symbols genes
- entrezGeneId
Entrez Gene ID
- molecularProfileId
Molecular Profile ID for data set
- sampleId
MSKCC Sample ID
- patientId
Patient ID
- studyId
Indicator for Abida et al. 2017 study
- alteration
Factor, Type of CNA
- uniqueSampleKey
character COLUMN_DESCRIPTION
- uniquePatientKey
character COLUMN_DESCRIPTION
Source
MSKCC-Epi-Bio/gnomeR documentation built on March 28, 2024, 2:42 a.m.
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| cna | R Documentation |
An example IMPACT cBioPortal mutation data set in API format
Description
This set was created from a random sample of 200 patients from publicly available prostate cancer data from cBioPortal. The file is in API format.
Usage
cna
Format
A data frame with copy number alterations (CNA) from Abida et al. JCO Precis Oncol 2017.Retrieved from cBioPortal.There are 475 observations and 29 variables.
- hugoGeneSymbol
Character w/ 324 levels, Column containing all HUGO symbols genes
- entrezGeneId
Entrez Gene ID
- molecularProfileId
Molecular Profile ID for data set
- sampleId
MSKCC Sample ID
- patientId
Patient ID
- studyId
Indicator for Abida et al. 2017 study
- alteration
Factor, Type of CNA
- uniqueSampleKey
character COLUMN_DESCRIPTION
- uniquePatientKey
character COLUMN_DESCRIPTION
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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