pivot_cna_longer: Reformat Wide CNA Data to Long
In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
pivot_cna_longer R Documentation
Reformat Wide CNA Data to Long
Description
Takes a numeric vector of CNA data in wide format where each column is a sample
and each row is a hugo symbol. Function will return a long format CNA data set
of just events (neutral/diploid instances are filtered out) and will recode events from
numeric to descriptive (-2/-1/-1.5 is deletion, 2/1 is amplification).
Usage
pivot_cna_longer(wide_cna, clean_sample_ids = TRUE)
Arguments
wide_cna
a cna dataframe in wide format (e.g. gnomeR::cna)
clean_sample_ids
TRUE by default and function will clean
sample_id field to replace "." with "-". If FALSE,
no modification will be made to returned sample_ids field
Value
A long data frame of CNA events
Examples
cna <- pivot_cna_longer(wide_cna = gnomeR::cna_wide)
MSKCC-Epi-Bio/gnomeR documentation built on March 28, 2024, 2:42 a.m.
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| pivot_cna_longer | R Documentation |
Reformat Wide CNA Data to Long
Description
Takes a numeric vector of CNA data in wide format where each column is a sample and each row is a hugo symbol. Function will return a long format CNA data set of just events (neutral/diploid instances are filtered out) and will recode events from numeric to descriptive (-2/-1/-1.5 is deletion, 2/1 is amplification).
Usage
pivot_cna_longer(wide_cna, clean_sample_ids = TRUE)
Arguments
wide_cna |
a cna dataframe in wide format (e.g. gnomeR::cna) |
clean_sample_ids |
|
Value
A long data frame of CNA events
Examples
cna <- pivot_cna_longer(wide_cna = gnomeR::cna_wide)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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