consequence_map: Consequence Map
In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data
consequence_map R Documentation
Consequence Map
Description
Data frame used as a data dictionary to recode common variant classification types
to standardized types that can be used in oncoKB annotation.
Usage
consequence_map
Format
A data frame
- variant_classification
character indicating type of mutation/variant classification as it appears in common mutation files
- consequence_final_coding
final value to recode variant_classification column to
- consequence_final_coding_2
final value to recode variant_classification column to
- consequence_final_coding_3
final value to recode variant_classification column to
MSKCC-Epi-Bio/gnomeR documentation built on March 28, 2024, 2:42 a.m.
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| consequence_map | R Documentation |
Consequence Map
Description
Data frame used as a data dictionary to recode common variant classification types to standardized types that can be used in oncoKB annotation.
Usage
consequence_map
Format
A data frame
- variant_classification
character indicating type of mutation/variant classification as it appears in common mutation files
- consequence_final_coding
final value to recode
variant_classificationcolumn to- consequence_final_coding_2
final value to recode
variant_classificationcolumn to- consequence_final_coding_3
final value to recode
variant_classificationcolumn to
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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