pathways: IMPACT Oncogenic Signaling Pathways

In MSKCC-Epi-Bio/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

IMPACT Oncogenic Signaling Pathways

Description

Oncogenic Signaling Pathways curated from Sanchez-Vega, F et al., 2018. See cBioPortal.org for more information

Usage

pathways

Format

A list of common cancer pathways and their associated alterations

pathway

name of pathway

genes

vector of gene alterations in each pathways

Source

Sanchez-Vega, F., Mina, M., Armenia, J., Chatila, W. K., Luna, A., La, K. C., Dimitriadoy, S., Liu, D. L., Kantheti, H. S., Saghafinia, S., Chakravarty, D., Daian, F., Gao, Q., Bailey, M. H., Liang, W. W., Foltz, S. M., Shmulevich, I., Ding, L., Heins, Z., Ochoa, A., … Schultz, N. (2018). Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell, 173(2), 321–337.e10. https://doi.org/10.1016/j.cell.2018.03.035

MSKCC-Epi-Bio/gnomeR documentation built on March 28, 2024, 2:42 a.m.