Man pages for MaStatLab/LTN
Fit LTN model to microbiome count data
| add_pseudo | add 0.5 pseudo count |
| clrcov_dtm_sim_log | clr covariance of compositions generated from DTM |
| clrcov_ilr | evaluate clrcov when ILR(p) ~ MVN(mu,sig) |
| clrcov_sim | clr covariance of compositions generated from LTN |
| clrcov_sim_log | clr covariance of compositions generated from LTN(mu,sigma) |
| count2y | transform count vector to y(A) and y(Al) |
| dm_mom | MoM estimate of Dirichlet Multinomial |
| dtm_mom | MoM estimate of DTM at each node |
| dtm_sim | generate data from DTM |
| gibbs_crossgroup | Gibbs sampler for cross-group comparison |
| gibbs_glasso | Gibbs sampler for posterior inference of LTN with sparse... |
| gibbs_ltn | Gibbs sampler for posterior inference of LTN with sparse... |
| ltnme | Gibbs sampler for LTN-based mixed-effects model |
| make_data | make data for two-group comparison |
| makeDataParser | convert phyloseq object into the format of input of the... |
| matloss | matrix loss |
| node_binom | binomial experiment at a node |
| plot_pmap | plot PMAPs along the tree |
| plot_timepoints | time series plot |
| psi2p_log | transform log-odds to compositions |
| seqtab2y | transform OTU counts to node counts |
| tax_tree | build phylogenetic tree based on taxonomy table |
