gibbs_ltn: Gibbs sampler for posterior inference of LTN with sparse...
In MaStatLab/LTN: Fit LTN model to microbiome count data
Description
Gibbs sampler for posterior inference of LTN with sparse Gaussian graph of nodes
Usage
1
Arguments
data
phyloseq object containing OTU table and phylogenetic tree
Y
(numeric) n*d matrix of y_i(A). Y and YL will be used if the phyloseq object is not provided
YL
(numeric) n*d matrix of y_i(A_l)
lambda
shrinkage parameter in graphical lasso prior
niter
number of Gibbs iterations
SEED
random seed for initializing the parameters
MaStatLab/LTN documentation built on Feb. 4, 2022, 10:35 p.m.
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Description
Gibbs sampler for posterior inference of LTN with sparse Gaussian graph of nodes
Usage
1 |
Arguments
data |
phyloseq object containing OTU table and phylogenetic tree |
Y |
(numeric) n*d matrix of y_i(A). Y and YL will be used if the phyloseq object is not provided |
YL |
(numeric) n*d matrix of y_i(A_l) |
lambda |
shrinkage parameter in graphical lasso prior |
niter |
number of Gibbs iterations |
SEED |
random seed for initializing the parameters |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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