plot_pmap: plot PMAPs along the tree

In MaStatLab/LTN: Fit LTN model to microbiome count data

Description

plot PMAPs along the tree

Usage

plot_pmap(
  pmap,
  tree,
  main.text,
  alpha = NULL,
  label = NULL,
  label_nodes = NULL,
  tip_label = NULL
)

Arguments

pmap	vector of PMAPs
tree	phylogenetic tree
main.text	title
alpha	(optional) posterior mean of alpha
label	labels of internal nodes
label_nodes	a set of k nodes to be labelled by A1, ..., Ak

MaStatLab/LTN documentation built on Feb. 4, 2022, 10:35 p.m.