a wrapper for gibbs_crossgroup
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formula |
a lme4 type formula where the first fixed effect is the group indicator |
data |
a phyloseq object |
test_baseline |
the group to be used as baseline in the linear model |
niter |
number of Gibbs iterations |
reffcov |
specification of the precision matrix of random effects. 1: diagonal, 2: sparse with graphical lasso prior |
SEED |
random seed for initializing the parameters |
save_alpha_only |
whether to only return posterior samples of alpha(A) |
gprior_m |
hyperparameter in prior of beta with default value 100 |
pnull |
prior probability of the joint null hypothesis with default value 0.5 |
lambda |
shrinkage parameter in the graphical lasso prior with default value 10 |
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