R/data.R

In MaayanLab/genesetr: Manipulate, Test, and Visualize Gene Set Overlaps

#' ENCODE gene set library
#'
#' May be used for genesetr examples.
#'
#' A list of gene sets from transcription factor
#' ChIP-seq studies conducted by the ENCODE consortium.
#' Downloaded from the web tool Enrichr on Aug. 23, 2017.
#' ENCODE_TF_ChIP-seq_2015.txt
#'
#' @format A list of 816 character vectors:
#' \describe{
#'   \item{gene set name}{contains gene names associated with the ChIP-seq experiment}
#'   ...
#' }
#' @source \url{http://amp.pharm.mssm.edu/Enrichr/}
"encode_example"

#' ChEA gene set library
#'
#' May be used for genesetr examples.
#'
#' A list of gene sets manually curated from transcription factor
#' ChIP-seq studies in the published literature.
#' Downloaded from the web tool Enrichr on Aug. 23, 2017.
#' ChEA_2015.txt
#'
#' @format A list of 384 character vectors:
#' \describe{
#'   \item{gene set name}{contains gene names associated with the ChIP-seq experiment}
#'   ...
#' }
#' @source \url{http://amp.pharm.mssm.edu/Enrichr/}
"chea_example"