parse_collection: Parse fastQC collection of files

In MahShaaban/Rfastqc: Read FastQC output

Description

A wrapper function to full parse multiple output text files of the FastQC utility. The function uses the parse_fqc to parse each file separatly in a named list.

Usage

parse_collection(file_names, names = NULL)

Arguments

file_names	A character vector of file names
names	A character vector of length equals that of file_names

Value

A list os lists. The outer list is named by the file names or the input of the argument names of equivelant length.

Examples

path <- system.file('extdata', package = 'Rfastqc')
fls <- list.files(path, full.names = TRUE)
fqc <- parse_collection(fls)

MahShaaban/Rfastqc documentation built on May 6, 2019, 4:36 p.m.