parse_fqc: Parse fastQC file
In MahShaaban/Rfastqc: Read FastQC output
Description
Usage
Arguments
Value
Examples
Description
A wrapper function to fully parse the text file output of FastQC in tidy
data.frames. Breifly, the function reads the text lines, parse the test
names, parse the test blocks of text and returns a list.
Usage
1
parse_fqc(file_name)
Arguments
file_name
A character refers to the text file from fastQC.
Value
A named list containing a data.frame for each test.
Examples
1
2
fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
fqc <- parse_fqc(fl)
MahShaaban/Rfastqc documentation built on May 6, 2019, 4:36 p.m.
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Description Usage Arguments Value Examples
Description
A wrapper function to fully parse the text file output of FastQC in tidy data.frames. Breifly, the function reads the text lines, parse the test names, parse the test blocks of text and returns a list.
Usage
1 | parse_fqc(file_name)
|
Arguments
file_name |
A |
Value
A named list containing a data.frame for each test.
Examples
1 2 | fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
fqc <- parse_fqc(fl)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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