parse_test: Parse test output
In MahShaaban/Rfastqc: Read FastQC output
Description
Usage
Arguments
Value
Examples
Description
The function parses the different test names and output in terms of pass or
fail from the text file output of the FastQC utility. Baically, the
function identies the test names lines' preceeded by '>>', parses the text
name and the output of that test in a data.frame.
Usage
1
parse_test(txt)
Arguments
txt
A character string such as this returned by
readLines
Value
A data.frame of two columns name and output
fot the test name and output in terms of pass or fail.
Examples
1
2
3
fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
txt <- readLines(fl)
tst <- parse_test(txt)
MahShaaban/Rfastqc documentation built on May 6, 2019, 4:36 p.m.
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Description Usage Arguments Value Examples
Description
The function parses the different test names and output in terms of pass or
fail from the text file output of the FastQC utility. Baically, the
function identies the test names lines' preceeded by '>>', parses the text
name and the output of that test in a data.frame.
Usage
1 | parse_test(txt)
|
Arguments
txt |
A |
Value
A data.frame of two columns name and output
fot the test name and output in terms of pass or fail.
Examples
1 2 3 | fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
txt <- readLines(fl)
tst <- parse_test(txt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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