test_get: Extract data for a particular test
In MahShaaban/Rfastqc: Read FastQC output
Description
Usage
Arguments
Value
Examples
Description
Extract the data of a particular test from a FastQC or
multiFasQC object.
Usage
1
Arguments
fqc
An object of class FastQC such as that returned by FastQC
or multiFastQC
test
A character string of the test name.
Value
A data.frame of the test data.
Examples
1
2
3
4
fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
fqc <- parse_fqc(fl)
fqc <- FastQC(fqc)
tst_dat <- test_get(fqc, test = 'Per base sequence quality')
MahShaaban/Rfastqc documentation built on May 6, 2019, 4:36 p.m.
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Description Usage Arguments Value Examples
Description
Extract the data of a particular test from a FastQC or
multiFasQC object.
Usage
1 |
Arguments
fqc |
An object of class FastQC such as that returned by FastQC or multiFastQC |
test |
A |
Value
A data.frame of the test data.
Examples
1 2 3 4 | fl <- system.file("extdata", "sample_1.txt", package = "Rfastqc")
fqc <- parse_fqc(fl)
fqc <- FastQC(fqc)
tst_dat <- test_get(fqc, test = 'Per base sequence quality')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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