ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences. This package has been tested with R 3.2
The following representations are supported.
1. Mismatch/Dimismatch kernel: build.mismatch.dictionary
2. Positional wildcard kernel: build.wildcard.dictionary
After the dictionary is built, use the build.features.kernels
function to determine the feature matrix and kernel for DNA Sequences.
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