kmer.score.in.position: kmer scores in all positions for sequences
In ManuSetty/ChIPKernels: String kernels for ChIP-Seq
Description
Usage
Arguments
Value
See Also
Description
kmer scores in all positions for sequences
Usage
1
kmer.score.in.position(dictionary.file, seqs, kmer)
Arguments
dictionary.file
File containing the dictionary
built using build.mismatch.dictionary.
seqs
DNAStringSet representing the sequences to
build the mismatch kernel. None of the sequences should
contain N in the nucleotide composition
kmer
kmer to be scores.
Value
Matrix of scores for each sequence and position
See Also
build.mismatch.dictionary,
kernelMatrix
ManuSetty/ChIPKernels documentation built on May 7, 2019, 2:46 p.m.
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Description Usage Arguments Value See Also
Description
kmer scores in all positions for sequences
Usage
1 | kmer.score.in.position(dictionary.file, seqs, kmer)
|
Arguments
dictionary.file |
File containing the dictionary
built using |
seqs |
DNAStringSet representing the sequences to
build the mismatch kernel. None of the sequences should
contain |
kmer |
kmer to be scores. |
Value
Matrix of scores for each sequence and position
See Also
build.mismatch.dictionary,
kernelMatrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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