determine.kmers: Determine all kmers with mismatches of a given length
In ManuSetty/ChIPKernels: String kernels for ChIP-Seq
Description
Usage
Arguments
Value
Description
Builds all possible kmers in the given range for
the given alphabet
Usage
1
2
determine.kmers(alphabet, mismatches, kmer.len,
range = NULL, consecutive.mismatches, verbose = TRUE)
Arguments
alphabet
Nucleotide alphabet
mismatches
Number of mismatches allowed
range
Range of numbers to determine kmers
kmer.len
Length of kmers
verbose
Logical to show logs
Value
A list of DNAStringSet elements: kmers
containining kmers without mismatches and
kmers.mismatches containing all the kmers that
were generated'
ManuSetty/ChIPKernels documentation built on May 7, 2019, 2:46 p.m.
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Description Usage Arguments Value
Description
Builds all possible kmers in the given range for
the given alphabet
Usage
1 2 | determine.kmers(alphabet, mismatches, kmer.len,
range = NULL, consecutive.mismatches, verbose = TRUE)
|
Arguments
alphabet |
Nucleotide alphabet |
mismatches |
Number of mismatches allowed |
range |
Range of numbers to determine kmers |
kmer.len |
Length of kmers |
verbose |
Logical to show logs |
Value
A list of DNAStringSet elements: kmers
containining kmers without mismatches and
kmers.mismatches containing all the kmers that
were generated'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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