Description Usage Arguments Value See Also
This builds the feature matrix and kernel using the
dictionary. Linear kernel is computed using
kernlab
package.
1 2 | build.features.kernels(dictionary.file, seqs,
kmers = NULL, kernel = FALSE, verbose = TRUE)
|
dictionary.file |
File containing the dictionary
built using |
seqs |
DNAStringSet representing the sequences to
build the mismatch kernel. None of the sequences should
contain |
kmers |
Subset of kmers to build the kernel.
|
kernel |
Boolean indicating if the kernel should be
computed. If |
verbose |
Boolean indicating if more logs should be shown |
List with following elements: features
Sparse
feature matrix (seqs X kmers) and kernel
Linear
mismatch kernel.
build.mismatch.dictionary
,
kernelMatrix
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