Man pages for ManuSetty/ChIPKernels
String kernels for ChIP-Seq
| build.features.kernels | Build features and kernels |
| build.mismatch.dictionary | Build mismatch dictionary |
| build.wildcard.dictionary | Build dictionary for wildcard kernel |
| create.kmers | Function to create all kmers |
| determine.kmers | Determine all kmers with mismatches of a given length |
| dinuc.alphabet | Convert to dinucleotide alphabet |
| hammingWithMismatches | hamming distance with mismatches |
| kmer.pairwise.features | Subset sequences and kmer features |
| kmer.score.in.position | kmer scores in all positions for sequences |
