API for MarenS2/pwOmics
Pathway-based data integration of omics data
| Global functions | |
|---|---|
| OmicsExampleData | Man page |
| PWidentallprots | Man page |
| PWidentallprotssub | Man page |
| PWidenttps | Man page |
| SteinerTree_cons | Man page |
| TFidentallgenes | Man page |
| TFidenttps | Man page |
| addFeedbackLoops | Man page |
| clusterTimeProfiles | Man page |
| consDynamicNet | Man page |
| createBiopaxnew | Man page |
| createIntIDs | Man page |
| findSignalingAxes | Man page |
| findxneighborsoverlap | Man page |
| findxnextneighbors | Man page |
| genGenelists | Man page |
| genGenelistssub | Man page |
| genIntIDs | Man page |
| generate_DSSignalingBase | Man page |
| genfullConsensusGraph | Man page |
| getAlias_Ensemble | Man page |
| getAliasfromSTRINGIDs | Man page |
| getBiopaxModel | Man page |
| getConsensusSTRINGIDs | Man page |
| getDS_PWs | Man page |
| getDS_TFs | Man page |
| getDS_TGs | Man page |
| getFCsplines | Man page |
| getGenesIntersection | Man page |
| getOmicsDataset | Man page |
| getOmicsTimepoints | Man page |
| getOmicsallGeneIDs | Man page |
| getOmicsallProteinIDs | Man page |
| getProteinIntersection | Man page |
| getSTRING_graph | Man page |
| getTFIntersection | Man page |
| getUS_PWs | Man page |
| getUS_TFs | Man page |
| getUS_regulators | Man page |
| get_matching_transcripts | Man page |
| getbipartitegraphInfo | Man page |
| gettpIntersection | Man page |
| identPWsofTFs | Man page |
| identRegulators | Man page |
| identTFTGsinPWs | Man page |
| identTFs | Man page |
| identifyPR | Man page |
| identifyPWTFTGs | Man page |
| identifyPWs | Man page |
| identifyRsofTFs | Man page |
| identifyTFs | Man page |
| infoConsensusGraph | Man page |
| loadGenelists | Man page |
| loadPWs | Man page |
| plotConsDynNet | Man page |
| plotConsensusGraph | Man page |
| plotConsensusProfiles | Man page |
| plotTimeProfileClusters | Man page |
| predictFCvals | Man page |
| preparePWinfo | Man page |
| print.OmicsData | Man page |
| pwIntOmics | Man page |
| pwIntOmics-package | Man page |
| readOmics | Man page |
| readPWdata | Man page |
| readPhosphodata | Man page |
| readTFdata | Man page |
| readTFtargets | Man page |
| selectPWsofTFs | Man page |
| staticConsensusNet | Man page |
| temp_correlations | Man page |
