identRegulators: Identify overlapping upstream regulators of x transcription...
In MarenS2/pwOmics: Pathway-based data integration of omics data
Description
Usage
Arguments
Value
Description
Identify overlapping upstream regulators of x transcription factors
Usage
1
identRegulators(pws_morex_TFs, data_omics, order_neighbors, noTFs_inPW)
Arguments
pws_morex_TFs
list of transcription factors in identified pathways.
data_omics
OmicsData object.
order_neighbors
integer specifiying the order of the neighborhood:
order 1 is TF plus its immediate neighbors.
noTFs_inPW
integer; only regulators in upstream pathways with more
than this number of TFs are identified.
Value
list of possible proteomic regulators.
MarenS2/pwOmics documentation built on May 17, 2019, 9:10 a.m.
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Description Usage Arguments Value
Description
Identify overlapping upstream regulators of x transcription factors
Usage
1 | identRegulators(pws_morex_TFs, data_omics, order_neighbors, noTFs_inPW)
|
Arguments
pws_morex_TFs |
list of transcription factors in identified pathways. |
data_omics |
OmicsData object. |
order_neighbors |
integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors. |
noTFs_inPW |
integer; only regulators in upstream pathways with more than this number of TFs are identified. |
Value
list of possible proteomic regulators.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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