myRun_DESeq2Function: myRun_DESeq2Function
In MarianoRuzJurado/RNASeq: A workflow for RNA-Seq analysis.
Description
Usage
Arguments
Details
Value
Description
Run_DESeq2 function, which also return the dds object
Usage
1
myRun_DESeq2Function(countDF, targets, cmp, independent = FALSE)
Arguments
countDF
= date.frame, containing raw read counts
targets
= targets, data.frame
cmp
= character matrix, contrasts defined in two columns
Details
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DESeq2")
Value
list containing data.frame with DESeq2 results & dds DESeq2 object
MarianoRuzJurado/RNASeq documentation built on Feb. 5, 2020, 8:46 p.m.
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Description Usage Arguments Details Value
Description
Run_DESeq2 function, which also return the dds object
Usage
1 | myRun_DESeq2Function(countDF, targets, cmp, independent = FALSE)
|
Arguments
countDF |
= date.frame, containing raw read counts |
targets |
= targets, data.frame |
cmp |
= character matrix, contrasts defined in two columns |
Details
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("DESeq2")
Value
list containing data.frame with DESeq2 results & dds DESeq2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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