parseDESeq2Res: parseDESeq2
In MarianoRuzJurado/RNASeq: A workflow for RNA-Seq analysis.

Description Usage Arguments Value Examples

View source: R/rna_seq_add_functions_for_package.R

function, which parse myRun_DESeq2 results into a collectResults list and creates folders for DESeq2 results

1	parseDESeq2Res(cmp,collectResults=collectResults,baseDir=baseDir,myRes=myRes,padj =padjDEgenes ,lfc=lFCDEgenes)

`cmp`	= character matrix, contrasts defined in two columns
`collectResults`	= list, with results of myRun_DESeq2
`baseDir`	= path, work directory
`myRes`	= list, containing ojects out of myRun_DESeq2
`padj`	= global enviromnent threshhold for padj-value
`lfc`	= global enviromnent threshhold for log2foldchange-value

list

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (x)
{
  }