myrun_edgeR: myrun_edgeR
In MarianoRuzJurado/RNASeq: A workflow for RNA-Seq analysis.

Description Usage Arguments Details Value Examples

run_edgeR function, which also return normalized counts

1 2	myrun_edgeR(countDF, targets, cmp, independent = TRUE, paired = NULL, mdsplot = "")

`countDF`	= date.frame, containing raw read counts
`targets`	= targets, data.frame
`cmp`	= character matrix, contrasts defined in two columns
`paired`	= defines pairs for paired analysis

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")

BiocManager::install("edgeR")

list containing data.frame with edgeR results and normalized counts

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (x)
{
  }